Publications of Vi

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91 publication entries, 4 of them (printed in bold in the list) acknowledge the project support.
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Paper (reviewed)

Badoual et al. 2006Badoual, M., Zou, Q., Davison, A.P., Rudolph, M., Bal, T., Frégnac, Y. and Destexhe, A.Biophysical and phenomenonological models of multiple spike interactions in spiketiming dependent plasticity.International Journal of Neural Systems (2006) 16: 1-19 abstract, fulltext
Brüderle et al. 2009Brüderle, D., Müller, E., Davison, A., Muller, E., Schemmel, J. and Meier, K.Establishing a novel modeling tool: A Python-based interface for a neuromorphic hardware systemFront. Neuroinform. (2009) 3:17
doi:10.3389/neuro.11.017.2009
abstract, fulltext, BibTeX
Bruederle et al. 2011Brüderle, D., Petrovici, M.A., Vogginger, B., Ehrlich, M., Pfeil, T., Millner, S., Grübl, A., Wendt, K., Müller, E., Schwartz, M.O., de Oliveira, D.H., Jeltsch, S., Fieres, J., Schilling, M., Müller, P., Breitwieser, O., Petkov, V., Muller, L., Davison, A.P., Krishnamurthy, P., Kremkow, J., Lundqvist, M., Muller, E., Partzsch, J., Scholze, S., Zühl, L., Mayr, C., Destexhe, A., Diesmann, M., Potjans, T.C., Lansner, A., Schüffny, R., Schemmel, J. and Meier, K.A comprehensive workflow for general-purpose neural modeling with highly configurable neuromorphic hardware systems.Biol Cybern. (2011) 104(4-5):263-96
doi:10.1007/s00422-011-0435-9
fulltext, BibTeX
Cessac and Viéville 2008Cessac, B. and Viéville, T.On Dynamics of Integrate-and-Fire Neural Networks with Conductance Based SynapsesFrontiers in Neuroscience (2008) 2: 2 fulltext
Cessac et al. 2009Cessac, B., Paugam-Moisy, H. and Viéville, T.Overview of facts and issues about neural coding by spikesJournal of Physiology-Paris (2010) 104(1-2): 5-18
doi:10.1016/j.jphysparis.2009.11.002
fulltext
Cessac et al. 2009bCessac, B., Rostro, H., Vasquez, J.C. and Viéville, T. How Gibbs distributions may naturally arise from synaptic adaptation mechanismsJ. Stat. Phys. (2009) 136 (3):565-602
doi:10.1007/s10955-009-9786-1
Chemla et al. 2009Chemla, S., Vieville, T. and Chavane, F. Voltage-Sensitive Dye Imaging: Technique review and ModelsJ Physiol Paris. (2010) 104(1-2):40-50
doi:10.1016/j.jphysparis.2009.11.009
abstract, fulltext
Davison 2009bDavison, A.P., Brüderle, D., Kremkow, J. and Muller, E. A common language for neuronal networks in software and hardware. The Neuromorphic Engineer (2010)
doi:10.2417/1201001.1712
abstract, fulltext
Davison and Fregnac 2006Davison, A. and Frégnac, Y.Learning crossmodal spatial transformations through spike-timing-dependent plasticityJournal of Neuroscience. (2006) 26 : 5604-5615
Davison et al. 2009Davison, A.P., Brüderle, D., Eppler, J., Kremkow, J., Muller, E., Pecevski, D., Perrinet, L. and Yger, P.PyNN: a common interface for neuronal network simulatorsFrontiers in Neuroinformatics (2009) 2:11
doi:10.3389/neuro.11.011.2008
Davison et al. 2009cDavison, A.P., Hines, M. and Muller, E Trends in programming languages for neuroscience simulations.Frontiers in Neuroscience (2009) 3:3
doi:10.3389/neuro.01.036.2009
Djurfeldt et al. 2008Djurfeldt, M., Lundqvist, M., Johansson, C., Rehn, M., Ekeberg, Ö. and Lansner, A. Brain-scale simulation of the neocortex on the Blue Gene/L supercomputerIBM J Research and Development (2008) 52: 31-42 abstract, fulltext
Escobar et al. 2009Escobar, M.-J., Masson, G.S., Vieville, T. and Kornprobst, P.Action recognition using a bio-inspired feedforward spiking networkInternational Journal of Computer Vision (2009) 82: 284-301 abstract
Gleeson et al. 2010Gleeson, P., Crook, S., Cannon, R.C., Hines, M.L., Billings, G.O., Farinella, M., Morse, T.M., Davison, A.P., Ray, S., Bhalla, U.S., Barnes, S.R., Dimitrova, Y.D. and Silver, R.A.NeuroML: A language for describing data driven models of neurons and networks with a high degree of biological detail.PLoS Comput Biol (2010) 6(6): e1000815
doi:10.1371/journal.pcbi.1000815
abstract
Hines et al. 2009Hines, M., Davison, A.P. and Muller, E.NEURON and PythonFrontiers in Neuroinformatics (2009) 3:1
doi:10.3389/neuro.11.001.2009
abstract, fulltext
Lévi et al. 2009Levi, T., Tomas, J., Lewis, N. and Fouillat, P.CMOS Resizing Methodology for Analog CircuitsIEEE Design and Test of Computers (2009) 26: 78-87
Long et al. 2009Long, P., Mercer, A., Begum, R., Stephens, G.J., Sihra, T.S. and Jovanovic JNNerve Terminal GABAA Receptors Activate Ca2+/Calmodulin-dependent Signaling to Inhibit Voltage-gated Ca2+ Influx and Glutamate ReleaseThe Journal of Biological Chemistry (2009) 284:8726-8737
doi:10.1074/jbc.M805322200
abstract
Lundqvist et al. 2005Lundqvist, M., Rehn, M. and Lansner, A.Attractor dynamics in a modular network model of the cerebral cortexNeurocomputing (2005) 69: 1155-1159
Lundqvist et al. 2006Lundqvist, M., Rehn, M., Djurfeldt, M. and Lansner, A.Attractor dynamics in a modular network model of the neocortexNetwork Computation in Neural Systems (2006) 17: 253-276
Lundqvist et al. 2009Lundqvist, M., Compte, A. and Lansner, A.Bistable, Irregular Firing and Population Oscillations in a Modular Attractor Memory NetworkPLoS Comput Biol. (2010) 6(6): e1000803
doi:10.1371/journal.pcbi.1000803
abstract
Marre et al. 2009Marre, O., Yger, P., Davison, A.P and Frégnac, Y.Reliable recall of spontaneous activity patterns in cortical networksJ. of Neuroscience (2009) 29(46):14596-14606
doi:10.1523/JNEUROSCI.0753-09.2009
abstract
Marre et al. 2009cMarre, O., Yger, P., Davison, A. and Frégnac, Y. Reliable recall of spontaneous activity patterns in chaotic cortical networks. The Journal of Neuroscience (2009) 29(46):14596-14606.
Winograd et al. 2008Winograd, M., Destexhe, A. and Sanchez-Vives, M.V.Hyperpolarization-activated graded persistent activity in the prefrontal cortex.Proc. Natl. Acad. Sci. USA (2008) 105: 7298-7303 fulltext
Wohrer et al. 2007Wohrer, A., Kornprobst ,P. and Vieville, T.Virtual Retina: a biological retina model and simulator, with contrast gain controlINRIA Research Report 6243 abstract, fulltext

Review

Ascoli et al. 2008Ascoli, G.A., Alonso-Nanclares, L., Anderson, S.A., Barrionuevo, G., Benavides-Piccione, R., Burkhalter, A., Buzsaki, G., Cauli, B., DeFelipe, J., Fairén, A., Feldmeyer, D., Fishell, G., Fregnac, Y., Freund, T.F., Karube, F., Gardner, D., Gardner, E.P., Goldberg, J.H., Helmstaedter, M., Hestrin, S., Kisvarday, Z., Lambolez, B., Lewis, D., Marin, O., Markram, H., Muñoz, A., Packer, A., Petersen, C., Rockland, K., Rossier, J., Rudy, B., Somogyi, P., Staiger, J.F., Tamas, G., Thomson, A.M., Toledo-Rodriguez, M., Wang, Y., West, D.C. and Yuste, R.Petilla Terminology: Nomenclature of features of GABAergic interneurons of the cerebral cortexNature Reviews Neuroscience (2008) 9: 557-568 abstract
Brette et al. 2007bBrette, R., Rudolph, M., Carnevale, T., Hines, M., Beeman, D., Bower, J.M., Diesmann, M., Morrison, A., Goodman, P.H., Harris Jr., F.C., Zirpe, M., Natschläger, T., Pecevski, D., Ermentrout, B., Djurfeldt, M., Lansner, A., Rochel, O., Vieville, T., Muller, E., Davison, A.P., El Boustani, S., and Destexhe, A.Simulation of networks of spiking neurons: a review of tools and strategiesJournal of Computational Neuroscience (2007) 23(3):349-98 abstract, fulltext
Thomson and Jovanovic 2010Thomson, A. M. and Jovanovic, J. N.Mechanisms underlying synapse-specific clustering of GABAA receptorsEuropean Journal of Neuroscience (2010) 31: 2193-2203
doi:10.1111/j.1460-9568.2010.07252.x

Book chapter

Frégnac et al. 2006Frégnac, Y., Rudolph, M., Davison, A. and Destexhe, A.Complexity and level hierarchy in Neural networksIn «Biological networks», Editor : F. Képès, In «Complex systems and interdisciplinary Science», World Scientific Series (2006) pp. 1-38
Fregnac et al. 2008Fregnac, Y., Rudolph, M., Davison, A.P. and Destexhe, A. Complexity in neuronal networks. In: Biological Networks, Edited by Kepes, F., World Scientific, Singapore, pp. 291-340, 2007
Lansner and Lundqvist 2010Lansner, A. and Lundqvist, M.Modeling Coordination in the Neocortex at the Microcircuit and Global Network LevelIn: Dynamic Coordination in the Brain: From Neurons to Mind. Strüngmann Forum Report, vol. 5. C. Von der Malsburg, W. A. Phillips and W. Singer, Eds. Cambridge, MA, MIT Press: 83-99.
Lévi et al. 2008Lévi, T., Lewis, N., Saïghi, S., Tomas, J., Bornat, Y. and Renaud, S.Neuromimetic Integrated CircuitsIn: VLSI Circuits for Biomedical Applications, Edited by Iniewski, K., Artech House, Boston, pp. 241-264, 2008

Conference contribution: poster

Davison, A., Yger, P., Frégnac, Y., Chan, J. and Newell, F.A combined pyschophysical--modelling investigation of the mechanisms of tactile picture perceptionFifteenth Annual Computational Neuroscience Meeting CNS*2006
Escobar, M.-J., Kornprobst, P. and Vieville, T.Spike to Spike MT Model and ApplicationsPoster at CNS 2007 (Toronto, Canada).
Escobar, M.-J., Kornprobst, P., Wohrer, A. and Vieville, T.Can we recognize motion from spike train analysis?European Conference Visual Perception, 2006
Escobar, M.-J., Masson, G., Viéville, T. and Kornprobst, P.Spiking MT model: Dynamics and motion patterns30th European Conference on Vision Perception (ECVP), Arezzo, Italy, 2007.
Escobar, M.-J., Wohrer, A., Kornprobst, P. and Vieville, T.Biological motion recognition using an MT-like modelNeuroComp06
Kornprobst, P., Chavane, F., Chemla, S., Reynaud, A. and Vieville, T.Reverse engineering of the visual brain cortical maps computation using optical-imagingEuropean Conference Visual Perception, 2006
Kornprobst, P., Chemla, S., Rochel, O. and Vieville, T.A 1st step towards an abstract view of computation in spiking neural-networksNeuroComp06
Kornprobst, P., Vieville, T., Chemla, S. and Rochel, O.Modeling cortical maps with feed-backsEuropean Conference Visual Perception, 2006
Tlapale, E., Masson, G.S., Vieville, T. and Kornprobst, P.Model of motion field diffusion controled by form cuesPerception ECVP Abstracts (2007) 36 :215b
Viéville, T. and Kornprobst, P.Modeling Cortical Maps with Feed-BacksInt. J. Conf. Neural Networks 2006 and Int. Conf. on Cognitive and Neural Systems 2006
Vieville, T. and Rochel, O.One step towards an abstract view of computation in spiking neural-networksInt. Conf. on Cognitive and Neural Systems 2006
Wohrer, A., Kornprobst, P. and Vieville, T.A Biologically-Inspired Model for a Spiking Retina2006, RR INRIA 5848
Wohrer, A., Kornprobst, P. and Vieville, T.Contrast gain control through a feedback in the retinaNeuroComp 06
Wohrer, A., Kornprobst, P. and Vieville, T. From Light to Spikes: a Large-Scale Retina SimulatorInt. Conf. on Cognitive and Neural Systems 2006
Wohrer, A., Masson, G., Perrinet, L., Kornprobst, P. and Vieville, T.Contrast sensitivity adaptation in a virtual spiking retina and its adequation with mammalians retinasEuropean Conference Visual Perception, 2006
Abitbol et al. 2010Abitbol, K., Hatchett, C., Fuchs, C., Stephenson, F.A., Thomson, A.M. and Jovanovic, J.N.Mechanisms underlying synapse-specific clustering of α1- and α2-containing GABAA receptors : Identification of proteins that specifically interact with the extracellular domain of either α1 or α2 GABAA receptor subunits Symposium 'GABAA receptors and anxiety' Chexbres, Switzerland, 2010
Abitbol et al. 2010bAbitbol, K., Goffin, D., Fuchs, C., Sihra, T.S., Thomson, A.M. and Jovanovic, J.N.Developmental changes in the structure and function of GABAergic synapses in cultured embryonic striatal medium spiny neuronsFENS Forum 2010: 074.1
Cessac et al. 2008Cessac, B., Rostro, H., Vasquez, J.C. and Viéville, T.Statistics of spikes trains, synaptic plasticity and Gibbs distributionsaccepted in NeuroComp 2008 (communication)
Cessac et al. 2008bCessac, B., Rostro, H., Vasquez, J.C. and Viéville, T.To which extent is the "neural code" a metric?accepted to NeuroComp 2008 (poster)
Cessac et al. 2008cCessac, B., Rostro, H., Vasquez, J.C. and Viéville, T. Statistics of spikes trains, synaptic plasticity and Gibbs distributionsproceedings of the conference NeuroComp 2008 (Marseille).
Chemla et al. 2008Chemla, S., Vieville, T. and Chavane, F. Biophysical cortical column model for optical signal analysisNeurocomp'08 (2008)
Chemla et al. 2008bChemla, S., Vieville, T. and Chavane F.Biophysical cortical column model for optical signal analysisIn Research in Encoding And Decoding of Neural Ensembles Conference (AREADNE) (2008)
Davison 2009Davison, A.P., Yger, P., Kremkow, J., Perrinet, L. and Muller, E. PyNN: Towards a universal neural simulator API in Python.16th Annual Computational Neuroscience Meeting (CNS), Toronto, 2007.
Davison 2010Davison, A.P. Challenges and solutions in replicability and provenance tracking for simulation projects. CNS*2010, San Antonio, Texas, USA, July 2010.
Davison 2010bDavison, A.P. Automated tracking of computational experiments using Sumatra. EuroSciPy 2010, Paris, France, July 2010.
Davison 2010cDavison, A.P. Integration: a collaborative software tool-chain for neuromorphic computation. Frontiers in Neuromorphic Computation, Paris, France, June 2010
Davison A.P. (2006)Davison A.P.Simulator-independent network modelling with Python and XML.Modeling the Brain's Labyrinth, Fodele, Crete, Greece, September 2006.
Davison A.P. 2006bDavison A.P.NModLib: a database of components for neuroscience models. World Association of Modeling - Biologically Accurate Modeling Meeting, San Antonio, Texas, March 2006.
Davison et al. 2006Davison, A.P., Yger, P., Chan, J.S., Newell, F.N. and Frégnac, Y A combined psychophysical-modelling study of the mechanisms of tactile picture perception. CNS*2006, Edinburgh, U.K, July 2006.
Davison et al. 2007Davison, A.P., Yger, P., Kremkow, J., Perrinet, L. and Muller, E. PyNN: Towards a universal neural simulator API in Python. CNS*2007, Toronto, July 2007.
Davison et al. 2008Davison, A.P., Brüderle, D., Kremkow, J., Muller, E., Pecevski, D., Perrinet, L. and Yger, P.PyNN: a common interface for neuronal network simulators. Neuroinformatics 2008, Stockholm, Sweden, September 2008.
Davison et al. 2010aDavison, A.P., Brizzi, T., Manette, O., Monier, C. and Frégnac, Y.Helmholtz: a modular tool for neuroscience databases.Front. Neurosci. Conference Abstract Neuroinformatics (2010) Neuroinformatics 2010, Kobe, Japan, August 2010.
doi:10.3389/conf.fnins.2010.13
Fuchs et al. 2010Fuchs, C., Abitbol, K., Stephenson, F.A., Thomson, A.M. and Jovanovic, J.N.Dissecting the molecular and functional requirements for the assembly of GABAergic synapses in vitroFENS Forum 2010:161.7
Klampfl et al. 2009Klampfl, S., David, S. V., Yin, P., Shamma, S. A. and Maass, WIntegration of stimulus history in information conveyed by neurons in primary auditory cortex in response to tone sequences39th Annual Conference of the Society for Neuroscience, 2009
Kremkow et al. (2008)Kremkow, J., Brizzi, T., Brüderle, D., Davison, A., Muller, E., Perrinet, L., Schmucker, M. and Yger, P. NeuroTools: analysis, visualization and management of real and simulated neuroscience data.Live demo at the INCF booth at Society for Neuroscience 38th annual meeting, Washington, USA 2008
Levi et al. 2006Levi, T., Lewis, N., Tomas, J. and Fouillat, P. Scaling Rules for MOS Analog Design ReuseMixed Design of Integrated Circuits and Systems MIXDES 2006, Gdynia, Poland, June 22-24 2006, pp 378-382.
Levi et al. 2006aLevi, T., Lewis, N., Tomas, J. and Fouillat, P.IP-based design for analogue ASICs: A case studyIP-based SoC Design Conference, IP-SoC 2006, Grenoble (France), 2006
Levi et al. 2006bLevi, T., Lewis, N., Tomas, J. and Fouillat, P.Scaling Rules for MOS Analog Design ReuseMixed Design of Integrated Circuits and Systems MIXDES 2006, Gdynia (Poland), 2006
Levi et al. 2007Levi, T., Lewis, N., Bornat, Y., Destexhe, A. and Tomas, J.An IP-based library for the design of analog Hodgkin-Huxley neuronsSystems, Signal and Devices Conference SSD 2007, Hammamet, Tunisia, March 19-22 2007 fulltext
Levi et al. 2007cLévi, T., Tomas, J., Lewis, N. and Fouillat, P.IP-based design reuse for analogue systems: a case studyProceedings of SPIE VLSI Circuits and Systems III, Maspalomas, Spain (2007) fulltext
Lévi et al. 2007dLévi, T., Lewis, N., Tomas, J. and Fouillat, P.IP-Based Library for Analog Design ReuseGDR SoC-SIP, Paris, France (2007) abstract, fulltext
Lévi et al. 2008aLévi, T., Lewis, N., Tomas, J. and Fouillat, P.IP-based methodology for analog design flow: appplication on neuromorphic engineeringProceedings of the IEEE NEWCAS-TAISA Conference, Canada (2008) abstract, fulltext
Lewis et al. 2006Lewis, N., Bornat, Y., Alvado, L., Lopez, C., Daouzli, A., Levi, T., Tomas, J., Saighi, S. and Renaud, S.PAX: un outil logiciel / matériel d'investigation pour les neurosciences computationnellesNeuroComp, 1ère conférence française de Neurosciences Computationnelles, Pont-à-Mousson, October 23-24 2006, pp 171-174
Rochel et al. 2007Rochel, O., Chemla, S., Kornprobst, P., Vieville, T., Daouzli, A., Lewis, N. and Renaud, S.Spiking neural networks in silico: from single neurons to large scale networksSignal and Devices Conference (SSD? 2007), Hammamet, Tunisia, March 2007
Rochel et al. 2007bRochel, O., Chemla, S., Kornprobst, P., Viéville, T., Daouzli, A., Saighi, S., Lopez, C. and Renaud, S. A first step towards in silico neuronal implementation of early-vision mapSSD'07: Fourth International Multi-Conference on Systems, Signals & Devices, March 19-22, 2007, Hammamet, Tunisia fulltext
Rostro-Gonzalez et al. 2009Rostro-Gonzalez, H., Cessac, B., Vasquez, J.C. and Viéville, T.Back-engineering of spiking neural networks parametersPoster at Eighteenth Annual Computational Neuroscience Meeting: CNS*2009 Berlin, Germany. 18-23 July 2009
doi:10.1186/1471-2202-10-S1-P289
abstract
Saighi et al. 2010bSaighi, S., Levi, T., Belhadj, B., Malot O., Tomas, J.Hardware system for biologically realistic, plastic, and real-time spiking neural network simulationsInternational Joint Conference on Neural Networks - IJCNN (2010), Barcelona, Spain
Tomas et al. 2006Tomas, J., Bornat, Y., Saighi, S., Levi, T. and Renaud, S.Design of a modular and mixed neuromimetic ASICICECS 2006, 13th IEEE International Conference on Electronics, Circuits and Systems, Nice, France, 10-13 December 2006, pp. 946-949 abstract
Vasquez et al. 2009Vasquez, J. C., Cessac, B., Rostro-Gonzalez, H. and Viéville, T. How Gibbs Distributions may naturally arise from synaptic adaptation mechanismCNS (2009), Berlin
Viéville and Cessac 2009Viéville, T. and Cessac, B. Parametric Estimation of spike train statisticsCNS 09 Berlin
Yger et al. 2007Yger, P., Marre, O., El Boustani, S., Baudot, P., Monier, C., Levy, M., Davison, A. and Y. Frégnac Chaos control: reliable signal propagation and pattern completion in chaotic neuronal networks. American Society for Neuroscience Abstract. 33: 792.3.
Yger et al. 2007bYger, P., Morrison, A., Diesmann, M., Davison, A.P., and Frégnac, Y. STDP in topographical neuronal networksRIKEN BSI Workshop, Wako, Japan. (2007)
Yger et al. 2008Yger, P., Davison, A.P and Frégnac, Y. PyNN: a common Python interface for network simulators.Talk at the 17th Annual Computational Neuroscience Meeting (CNS), Portland, USA. 2008
Yger et al. 2009Yger, P., El Boustani, S., Marre, O., Davison, A.P., Destexhe, A. and Frégnac, Y.Spatial organization of evoked neuronal dynamics in 2D recurrent networks, with or without structured stimulation.Eighteenth Annual Computational Neuroscience Meeting CNS (2009) 10: 94 abstract
Yger et al. 2009bYger, P., Brüderle, D., Eppler, J., Kremkow, J., Pecebski, D., Perrinet, L., Schmucker, M., Muller, E. and Davison, A.NeuralEnsemble: Towards a meta-environment for network modeling and data analysisIn Proceedings of the 32th Göttingen Neurobiology Conference

Web publication

Alonso et al. 2005Alonso-Nanclares, L., Anderson, S., Ascoli, G., Benavides-Piccione, R., Burkhalter, A., Buzsaki, G., Cauli, B., DeFelipe, J., Fairen, A., Feldmeyer, D., Fishel, G., Frégnac, Y., Freund, T. F., Fukuyi, K., Glarreta, M., Goldberg, J., Helmstaedter, M., Hensch, T., Hestrin, S., Kisvarday, Z., Lambolez, B., Lewis, D., McBain, C., Marin, O., Markram, H., Monyer, H., Muñoz, A., Petersen, C., Rockland, K., Rossier, H., Ruby, B., Somogyi, P., Staiger, J. F., Tamas, G., Thomson, A., Toledo-Rodriguez, M., Wang, X.-J., Wang, Y., West, D. and Yuste, R.Nomenclature of features of GABAergic interneurons of the cerebral cortex.Web publication (2005) fulltext

Other

Davison et. alHelmholtz database: released as open-source software: http://www.dbunic.cnrs-gif.fr/documentation/helmholtz http://software.incf.org/software/helmholtz/
Escobar et al. 2007Escobar, M.-J., Masson, G. S., Vieville, T. and Kornprobst, P.Spike to Spike Model and Applications: A biological plausible approach for the motion processing.INRIA Research Report 6280
Escobar et al. 2008bEscobar, M.-J. , Masson, G.S., Vieville, T. and Kornprobst, P.Rate versus synchrony code for human action recognitionINRIA research report 6669 (2008) fulltext
Levi et al. 2007bLevi, T., Lewis, N., Tomas, J. and Fouillat, P.IP-based design for analogue ASICs: A case studyDesign and Reuse Articles, May , 2007 fulltext


 
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3 August 2011